NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10021114

Scaffold Ga0310345_10021114


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10021114 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5453
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051977Metagenome / Metatranscriptome143Y
F077398Metagenome / Metatranscriptome117N
F097505Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0310345_100211145F051977AGGAMGTSIYVYETEDEYNTQYHRMDKEVMFSAPILDIFVKPEEKLWVVSKISKHKERPQLGRSIVHFVNGTVFDYSEGNEIPIRQKDVKYNPKNNKIEFFPRKLRKAALEIRVDRFYGEKPKNRKEINNSLRFYDISRDRLNFILKHEKPIQS
Ga0310345_100211147F097505N/AMDWKRAKKRMHCDCSVHDIVSSVLEYFIITPMFATAYLAVTVPWMLFVIKLDGEQFADFLWQSVLVDLIVAYPVAKLVMKLKPRIEKITSLRH
Ga0310345_100211148F001235GAGVATKLNVDTGGLDIGKKLWKKHQDNEYTHVDNYKEAICINCFKKDATSATIADICGECAGKRGREPLLATITQKMYGLCFFCGNYHFNIEQINARFCRGCHRKIANVTKEYNKKGGMFGADPFWLHMKKKLGKEWKELMHENAGNRR
Ga0310345_100211149F077398AGAAGMNLNQQGGGKMVEKKKSKEVIKATVQVKGGKVDAYTKAYNDTIKRAGSVRVEKDLPTEVKVNIPNVYHPNYKLIDETIEDIKKMSRKVSTSDYSANNVYIILQDALKKTRLAEK
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