Scaffold Ga0310345_10020633

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10020633
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5517
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001922	Metagenome	617	Y
F014859	Metagenome	259	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100206332	F001606	GAGG	MTYGYDDVTFTSTGAGATAEVQLNDATSLSAPDPAHGFLACVPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAEPLTSNVVAAGVGATVIYDTDGTNGAEQYYTRPTNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRVAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN
Ga0310345_100206333	F000704	AGGTGG	MPHTTGEILPSRVKAIITYDVANYGEDLFLPFTDVGLTETALTYSGVAMTRDLENSNQPMDVFPVVFSDTDSGLLLNEGNDTAFSQTYTFLPDMTAVIYAIHLNIPAALTCSSFSSGTLNVGALHIKITERSTDNRLLYENTFQSGAANLTGTGTSLHWFTRDIVETIQVTKGNPIDILVELVTVVTGTNTRQEGYCPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKTRVSLFGQ
Ga0310345_100206334	F014859	AGG	LVSELIPPEIIPIIWFAGISVTVYFFFRKFSDVIKEKIKHTTRKNKTVNTEEAGDQFDNLVNNAPRILDEVNKEITAQREQGVTDDQMKGLLQKKQLLELGTSIPPEVYNLVGKPLVKKLIGFVGKI
Ga0310345_100206335	F001922	AGG	MVIQKLLIEEGLKRGLKESQKYSVSVLGYDFIGLVSRLSVFFIMAFLINSYFIATISGGIWLNSLGGFFNMKFPSTLPEWLTQLFTTGYKGFTFWNLVTTIAVLIVVVEAMQYDKMLKEKGQKPNITTLAVFGVIALGLSLITFPTIIQKLKERRILNAS