Scaffold Ga0310345_10011379

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10011379
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7501
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F001922	Metagenome	617	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1001137912	F001922	N/A	MIQKLLVEEGIKRGLKASREYSVSVLGYDFIGLISRLAIFFLTGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVMEYMQYDRLLKQTNERPNITTGAVFAMIGLGLSLITFPQIVQKFKEMKILNGQ
Ga0310345_1001137913	F000730	GAG	LVNEFIPPEIIPLVWFSCISVTVYVFFRVFSSTLKEKFKQTNLSRKKAEGSGHTDGQIDDLINNAPRILNEINKTIAEQKAQGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI
Ga0310345_1001137914	F000704	AGGTGG	MPHVNGEILPSNVKAVATYDIGSYGEDLFLPLTDVGLTETALTFSTATVTRDTTDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFDQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNDRLLYENTFQSGAATLGATGTSMHWFTQDIVETIKVNKGNPVDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYSKQRVSLLGQ
Ga0310345_1001137915	F001606	GAGG	MTYGYDDVTFTSIGTATAETQLNSGTSLSAPDPAHAFNAVIPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQALVANSVAPGVGATVLYDTVSTNGAEQYYTRPTNETAAATAINTRTEGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN
Ga0310345_1001137916	F001712	N/A	KKSIGSQWGKISKGAGGLAFLSQVTGQDMSASVGQPIGGRAQNFINSLSGRITGYTPFKNAAGANTPQTISIDGMFNKWSGIGLGTLIYGMLPVKMLPHRGKAKTLGKSLLSGGVLGGLFSAGNPQNTNLLSSSTSVVSIPASEVSYT