Scaffold Ga0310345

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10007781 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032278 Open in IMG/M

Scaffold ID

Ga0310345_10007781 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9218
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (58.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9218

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (58.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7719

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F025142	Metagenome	203	Y
F065107	Metagenome / Metatranscriptome	128	Y
F065858	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100077811	F065107	N/A	MARPNKEVLEERQNFLQTITECADNPSKFSEVFLNHKLFPYNKQYVDCKDRFIVY
Ga0310345_1000778110	F065858	GAG	MNEIKLKTFQDNLPEKAITKNQLAKIESRLPELHRAKAIIGHSTSQASYALQTLTMLDDSPMSRMKQCLSNIEHKYQAVREAYFKIENDKLEIKEIESNKPVTESGRLKIRELETNIESTQNAMGNSLREIGLFQDMYEAIRKSNNIPEVWTEHDYEKQEIANMVRRSFRIGIQSLSNTHAVSIAAVEFWEQLGIHPQSAEAHCRNYLQQVENIIKGGEEPDVRVMYEFLDGMAEKFKDSYKFALDRIGLKELGSEEFRVGD
Ga0310345_100077813	F001066	N/A	MADDDIFKIKPVGNTKLVIENKRKTVSPFNSAKNLKFANIPALCDQCVYRSIDDGGNGKCPKYEAGAVCAIRDDFVKFIAELDTREPEDVKAMLDMLVKLSFENVLMALTQAKMDGNIPDRNTKSEINSLLNIVKSINDLNSKISITEEKRYTKEGDIENIFRQIKAQKSE
Ga0310345_100077816	F025142	AGGAG	MSSADMTGRTTEFRIKAGSRATLQLTVADSSGTGKDLSNTTTYATGKWKVWQPSGTLIINGDIVFTTRASGLVSYVLTATDTAIANAGIWAGEVELKDSNGNISDQTQTFQFILEESY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310345_10007781

Overview

Ecosystem & Geography

Associated Families

Sequences