NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10007521

Scaffold Ga0310345_10007521


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10007521 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9407
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (45.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051977Metagenome / Metatranscriptome143Y
F077398Metagenome / Metatranscriptome117N
F097505Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0310345_1000752112F077398AGGAGMNLNQQGGGKMGKKNKAEVTKATVKVRLGKVDVYTKAYNDLQKNAGIDKNLPTEEKVNISSVYDPDYKLIDETIDDIKKTSRKVSTSDYSANNVYLILQDALKKIILAEK
Ga0310345_1000752113F001235N/AMATKLNVDTGGMDIGKKLWKKHQDNEYTHVDNYKEAVCINCFKKDATSATVVDICGECAGKRGREPLLATVSQKMYGLCFFCGKYKFEIEQINARFCRKCHRKIADVTKAYNKKGGMFKTDPFWIHMRKKLGKDWMQIMNSNSGNKR
Ga0310345_1000752114F097505N/AMDWKKTKKRMHCDCSIHDIVSSVLEYFIITPMFATAYLAVTIPWMLFVIKLDGEQFVDFVWQSVLVDLIVAYPVAKLVMKLKPRIERITSLHH
Ga0310345_1000752116F051977N/AMGTAIYVYETEDEYHTHYNRMDKEVMFSAPILDMFLKPDEKIWVVSKISKHKERPQLGRSIVHFVNGTVYDYTEGDEVQIRQKDVKYNPKNNQVEFFPKTLRKATLSIRVDRFYGEKPKKKHEINNSLRFYDISRDRLNFILKHEKPI
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