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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032278 Open in IMG/M |
| Scaffold ID | Ga0310345_10007122 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9694 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (57.69%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.7719 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F030463 | Metagenome | 185 | Y |
| F081447 | Metagenome | 114 | N |
| F090508 | Metagenome | 108 | N |
| F093993 | Metagenome | 106 | N |
| F097513 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310345_1000712210 | F090508 | N/A | MKYKANWIKTEKGNGIKTGNTITVKVIGAITISGWIARKTWHGKKIMQIGQGKTLVSFKLKEKKRKKTVPYKTGRYILKISATGKNNKSNTWTDEFEVI |
| Ga0310345_1000712213 | F030463 | AGG | MTEIVETIAIIGIITGSLFGLFRYEINKLCKEIDIVRLDIKEIHDKVFH |
| Ga0310345_1000712225 | F093993 | N/A | MVKIIWLHVPELKPYMMETKDRMTELNELGFNVIDGITRPNEAYAIWKPLNEHWLTDDIIIVGQDNVPTVKMIKELESCTEEACVNPCISYPASTLWPRNMQNQIIFEKGKPQRMLEVDETPEWVDYGGTGVSKISVRCQKRIKLKETPCGFPNLDGTLLKLGLNKWHTHYPMHKHNKKEMSMSHVKAFKQ |
| Ga0310345_1000712226 | F081447 | N/A | MTEIQNIAYSMLELTDNIVRRKVKNSIVIAMYDRLVLPFFRKQIQNTPDSEIKKSLQLAYDNLSPLFEKKKMKEMIDEADKLTGFKLADKGLLKEQSKYF |
| Ga0310345_100071224 | F097513 | GGA | LTSDTWKLITLDWDKFSWHKAYKIIKFIFNDRQDITKIKVYSSPNLDGYHIYIYFDHWLEWSEVLKLRRKYQDDSKRLINDFFKTVSSEKMVMFRDKNGKKEIFMYEFWPTRFEMPSHITSKIHAPMLGTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |