Scaffold Ga0310345_10006994

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10006994
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9805
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F040140	Metagenome	162	N
F043987	Metagenome / Metatranscriptome	155	Y
F054107	Metagenome / Metatranscriptome	140	N
F066859	Metagenome / Metatranscriptome	126	N
F078831	Metagenome	116	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1000699410	F040140	N/A	MPKFGKKFEDTGYDGSKHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQHPKDLDFALKHIVWSKKQLEPGLKCELC
Ga0310345_1000699413	F033842	AGAAG	MSQDSKEKKIIMNILKDLTSPTKLIDKAKLGMKGAAGYAAATVALEAGTQLLERFVLDPHLPAAANVMNTVITNNAPGLGTVDVRDAIVLLPAETQAYQMLSKSNKQTHFINALSSYVTKIVLRRTGLNPKEIADKTEKLITPRTMLPSVM
Ga0310345_1000699414	F078831	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAISVTINGLQNGSTATTIANALGLVNPLEVDVGGIPQIRVRLTDMYAMDMLWLQHNPLTKISGGDNQEWIVNQIVYPCWFPPSRAEATLTATYAAVTNADNTEVSITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWSEIQNPGIFNGQMFNALEESPSTTGILDNYRWLSLAKEPIPAGTRVQTDIMAGVDSSAIRTVQVQQVPFRGR
Ga0310345_1000699415	F066859	GAGG	MVHELPDNNGRVQTRINTSRAGYFISNFDTAESCTLTPQGGGTIDIVLPPGAKIAIPDKIGMVAQGGNSSRNYVFLMWTAGYAN
Ga0310345_100069943	F043987	GGAG	MNKNYLKVPAEHFWILSKREKSQLLSELKRRVEVLE
Ga0310345_100069947	F054107	GGA	MKKEKPEPKVNAAAGNFVNAVQKGLTEMNKRLQDMEQKVQEKDKLINDMAMALKSQQDVLVNTPPQEVPGSEAERNQPMTKGDFFQVIKDGIQLLRQQTAAPDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVS
Ga0310345_100069949	F081448	GAG	MKALDVLTDIIKNKNLAKEYALQESKDLRVLSPKKDTALACLLSGIERVETIPTWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLKPHLLKLKGSHTTMNETLKEWRI