Scaffold Ga0310345_10006128

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10006128
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10533
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis → Candidatus Nitrososphaera gargensis Ga9.2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F040140	Metagenome	162	N
F065858	Metagenome	127	Y
F066859	Metagenome / Metatranscriptome	126	N
F068933	Metagenome	124	N
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1000612810	F033842	AGGA	MSQEAKKMKLETLLKPSKLIDKAKLGMKGAAGFAAATVALEAGTQLLERFVFDRYLPQAANLMNTVITTSAPALGTIDVRDAIVLLPAEQQAYKALSSGNKQAHIINALASYGTKVILRRTGLNPKEIADKTEKIIAQPMRLPSVM
Ga0310345_1000612811	F078831	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSAPSIANALGLVNPLEIDVGGIPQIRVRLADMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADTTEISITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDVMAGVDSSTIRTVQMQQVPFRGR
Ga0310345_1000612812	F066859	AGGA	MVHELPDENGRVQTQINTSRAGYFVSNFDTTESVTVTPQGGGTIDIVLPPGAKIGIPDKIGLVAQGSNSSRNYIFLMWTAGYAN
Ga0310345_1000612817	F065858	AGCAGG	MNEIQLKTFSDNLPSQTITKNQLEKIESRLPELHRAKAIIGHSTSQASYALQTLNMLDDSPMSRMKQCLSNIEHKYQAVREAYFNIEKKKLEIKDLKNNKDELSRLKIRENETSIESIQNSMGNALREIGMFQDFYENIRKANNIPLQWNEHDFEKQEIANMVRKSFRLGIQTISNSHSVSIAAVEFWEQLGIHPQSAEAHCRNYLNQVQKIISDGKEPDIRVMYEFLDGMAEKFKDSYKFALDRIGLKELGSEDFRL
Ga0310345_100061287	F040140	GAG	MALKCQALKFKEFGPKHEDTGYDGSLHWKVLHDEVKSIECDFCQQKGIKLMRGLHDSVNIHLGKEVQYPKDMDFLLKHVAWSAEQQGSGLRCFKCQD
Ga0310345_100061288	F068933	AGG	MSRLDLLNKLHWELLMPKSMPGMKGTIGRPSDVIPVHAAGQLKGYWKNVKHKPATGFEVSKRNKFKE