Scaffold Ga0310345_10004141

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10004141
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13324
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (56.25%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F012984	Metagenome / Metatranscriptome	275	Y
F015739	Metagenome / Metatranscriptome	252	Y
F022428	Metagenome	214	Y
F025299	Metagenome / Metatranscriptome	202	N
F031531	Metagenome	182	Y
F040141	Metagenome	162	Y
F089026	Metagenome	109	Y
F093971	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1000414113	F012984	GAG	MDQLTFEPLSELQKKQYLAELGLEPVLSYYNNEIKKHSRVCFKSLELREKRDRCFRLMREEYQELC
Ga0310345_1000414115	F015739	N/A	MNRITPELHTFKWSPKTKSKEDLELVKVLEQLVKDQNISKTQLTRKALNDFINYNKNIKNND
Ga0310345_1000414119	F089026	GGAG	MTSKRSYKNRFITEFIEKYSDKSDRHFIQVKKQWRDLEK
Ga0310345_1000414122	F031531	AGGA	MFFNPDKKAYYDLIDGQLLAKMETEVKSAFEDLHTVELEKDKTLVIKQITNDSWSDETKEKGVLFLEEKNRTKKGLTLTKSDCGKLAIILKEISEK
Ga0310345_1000414124	F040141	N/A	MRCKSHIFIFKSDKCMKGSYDFMKNTGICYFCMRYIKKMYGLTEPDLLKNNFYKNFISTDKDFLQTIHNF
Ga0310345_1000414125	F022428	AGAAGG	MFLALIRSLLIPKAKNITKKAENTFFVMNLIWKVANSEEFGSRYLRQFTTKLHLYSD
Ga0310345_100041413	F093971	GGTGG	MSEEKKSKKDESENFIDTLKDLLADPHQDEAWNEKFKATVRKYFDL
Ga0310345_100041414	F008691	N/A	MASLAGYNVKEEATEIKKNLWESRDNIIVLVLAGVVGGVVTRFIVPKAVTEGSIFNRFKSWFGYDQEEYEEEE
Ga0310345_100041415	F003270	N/A	MIIVKMARKRTRRRKAKKSGSKSIKSMVRQIVNKGSAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGVAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNNGGRVSTANVTPNVMVQNRSQTNRAFAVAQRNRSFVPVDSFDYSTGSAFR
Ga0310345_100041416	F008596	GGAG	MSGSWDIATATSLGTGVAKTQINGGNNLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGAFINIVVPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTAATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSFAGYGEFSSNDFGNSLPLKVPMQPGAAGLAGTTTPGMLQLASYHNTHMPMKTSCKISTSFTNDVAQTATSRFVMGVGYTKQG
Ga0310345_100041417	F002100	AGGAG	LSQIPRDSFSPALIKPTYNVGDYGHDIIIPLNCLTGSATTTLTPSTATFVQVLEDGRVPVDEVNQFITDSDKMELVHAGNDTDYDTTFEWLPDMSFNAYKASFSVAVAMKVSAYTSGNFAISSVQFTMKVVGGGEGDQIIVDRIVDPGMANMVGVAEQVAILNVDTKTSAKIADKPVTIQVKVNTSSGTGTYQCGIVPLFCYFGSAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0310345_100041418	F025299	AGGAG	MIIEDIPYFVEFIVLGIVLGFGYGFTKLFLNHAKDKSKIRRSERKTKEANSMEDEMDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLARKAQQYEMPIRMLGKPILKKVLSVIDKFGV
Ga0310345_100041419	F002150	GGAG	MVSVAIPAMVARQTVKKSGQVLQEQFGYNFIDLITKLAIFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPNQWVSLFVDSEQTFSSTPTAPGQFNPPGWDRPYDYGTPEHQQEEPHLFPQKDKQFRFWDLINAIAIFYISWEAYKYWERGGKDFLTLGIFGLLIAVLSVLSFSRFINRFSLNRFQEANK