Scaffold Ga0310345

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10003127 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032278 Open in IMG/M

Scaffold ID

Ga0310345_10003127 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16025
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (50.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

16025

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (50.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7719

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F005948	Metagenome / Metatranscriptome	385	Y
F064804	Metagenome	128	Y
F073660	Metagenome / Metatranscriptome	120	N
F084350	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1000312710	F084350	AGTAGG	MAIATYSSIDDMIDMIKSKWNTSTGGVTPRIERIWDEKTIGFGDMELKKGIILIEPMDEGVTYFGLYGVDHMHNVDLTLDVRSYQNIDRHSEIVGELSRIIKDQIRRSTFVDLRITGTVPLSRLYRNMFRHMIRIRYRKMNP
Ga0310345_1000312713	F005948	AGG	MVELNHNIVSFNSDTLIKGDHGVLVAVFVTKKGTGSNKVEFRNGTTASATPVECTIFTAIEGNYQNIHRRFENGIFADCDGAAEVTVVFK
Ga0310345_1000312715	F001625	N/A	MSMALTISTSDWTGANVRKTLSWQAALVSKLRVYAIKVTFGASDNYATGGVSADLKEGRVSTLVAVIPTYTNSLREVVYDKANEKIKLYDVGGSATTPFTETPNTSSACASKIFEFLVIG
Ga0310345_1000312716	F064804	GGCGG	MDVRKNTDMVMVHHADKLAKARDLIIIFLFGSILIETIANVELLGSWWK
Ga0310345_100031278	F073660	N/A	MALQSFSIKFKGVDHPVEFEDDMEFGKFEQIIQKCSNFAEGSNPVDNVQNYRKEIMLNSIKKAPFEISESGLNGLGYKTVSLIADKILEAYPLGNYLNQMMKPFEDSMKKIN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310345_10003127

Overview

Ecosystem & Geography

Associated Families

Sequences