Scaffold Ga0310345_10002131

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10002131
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20514
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (81.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F047373	Metagenome	150	Y
F048646	Metagenome	148	Y
F067209	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1000213120	F067209	N/A	MNSEDKKRQLSMTDWVTQFSDGKNNEATAELAAKFMFAMSYYHDKMKLHVMLHPFFYVAGFLTAYYLMGK
Ga0310345_1000213121	F005620	AGTAGG	MLTDEEINKHIETFKTFCKNNRLRLKESEDGLPIARAIGKFKEDEFFCNFKDGSIGVYAIRETPRQFTYLHKKLIKLGCLPHQVGEFEASYDLEWMNIPPVARLLKIRKGAAKVKDPKWL
Ga0310345_1000213122	F047373	GGAGG	MITNQKIDVGDVEYSKLSHVLSFTIAANMATIETMEDICYRNDMTMEEVAEEMGKLLHHAILTNYDRGGLRRKYD
Ga0310345_1000213128	F048646	GGAGG	VLKIAEVYEKQIRTFKERVDGSAYVNFEKVYDTRECLLNTEYVVAIHPHEFTTSADDRKIEGRFPEGTKFSTLVLDGNSFRKSEIIAVGSFDKFCRMLETSPS