Scaffold Ga0316202_10239396

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10239396
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 843
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015532	Metagenome / Metatranscriptome	254	Y
F046006	Metagenome	152	N
F053545	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_102393961	F053545	N/A	DCPMCEEIITHMGQRITTHSGYVKLPIKDTRKNIEGGRESKTKWSGETLPEVGK
Ga0316202_102393962	F046006	GGAGG	VREYLMPLAKYINFVLLLIILYFCITVMVVNFRYIDKLNNTIDTMWHEIEQVKDTNIKLYQFIEEHGNDITGR
Ga0316202_102393963	F015532	GAGG	MTLQDDKIMRHEIPNRMMSATFTLPIDDRKVVGIVNYTATEEGIIPMALWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKELAETLSQDNIIGQMVHYFVK