Scaffold Ga0316202_10180756

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10180756
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 979
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029927	Metagenome	187	Y
F063642	Metagenome	129	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_101807561	F063642	N/A	MEHTCTQLFDEVIQLATPDCIKRRDMSLVRKLKELQNYTQRLERIAEDALDILKEEKA
Ga0316202_101807563	F091789	AGGA	MDVKRQWGELMRCEGLQQINRPAPTGYGEAPDLLKGKVEGPGFVIYAQGYDPRESNHTISSRAAIYGNRYCGTLNPF
Ga0316202_101807564	F029927	N/A	MKPVNTKSLFHVLCATLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLES