Scaffold Ga0316202_10143906

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316202_10143906

Scaffold Ga0316202_10143906

Overview

Basic Information
Taxon OID	3300032277 Open in IMG/M
Scaffold ID	Ga0316202_10143906 Open in IMG/M
Source Dataset Name	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1107
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Maine
Coordinates	Lat. (^o)	43.8603	Long. (^o)	-69.5781	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F019024	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_101439061	F019024	AGGAG	MKLYKLEASGYETFFGTMENPIARDVTTIAQKPDCSAFLLLSKDSQDGLELLSTVPSGFDFTYCQEWGLTINDAVVARVVLDLRRKAY
Ga0316202_101439062	F000060	AGGAG	MASKFNSEFNYRYQVIGDTPWEKIKTLQGFLEGRIRAAALEEVSVLKNQAKISKLKHLQNGGNGLEHEILELKADILEAKSHQATEKEAYELNRKEIEILKGLLDELYVIAEPTRIKGYSDEEMWEANQANEFTVNIGREIQAEMIANGRPSAAKLRNAMSNPYTWNALKDIGLVPKETKILVGNINPHDKIKLIGVEDEVI

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