Scaffold Ga0316202_10125543

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316202_10125543

Scaffold Ga0316202_10125543

Overview

Basic Information
Taxon OID	3300032277 Open in IMG/M
Scaffold ID	Ga0316202_10125543 Open in IMG/M
Source Dataset Name	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1190
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Maine
Coordinates	Lat. (^o)	43.8603	Long. (^o)	-69.5781	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024225	Metagenome	207	Y
F071255	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_101255432	F071255	AGG	MSDNDNNESYMKLDELSGKLKDGLSEEFSTIKGSINDLADKMDLTQKEKDGMTSVSDFVEHLDNCDNENCEIHKSINTKQNNFYMKGFLLGAKFGKQKRN
Ga0316202_101255433	F024225	N/A	INFTTEKIDRKLYEKSILTYIYDHYLFNDYRRLVEQDKWEINIRTLKDFNWNFYDKNIKNLSKSMPHGVTGDNVVDCYVTDESNRMYYLQNMMVICHELSHMILKLYYPDSRGMLDHDDMWGKAGDIRNYFSTEIHNRVAKGKTRKFTAWHEREYYFYGIDIDDITNKRNLNNGI

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