Scaffold Ga0316202_10098748

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10098748
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1353
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049548	Metagenome	146	Y
F058952	Metagenome	134	N
F060810	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_100987482	F049548	AGGAG	MNEREKQIAQATQDFLMALPDKIKNGHLGAVICTIFEAFELDHEERARICEGVLNVMLEADMRDDERAAQAADDVIARAAAKARK
Ga0316202_100987483	F060810	GGAGG	MSIKVGLPDVTFNALCKLTEVDREFIGSPDYMGVAQFWSWSHPQKTRLSRASVSARRKIHHALVRDGLDLDGDTGIHRSIISIVLEKEEQGL
Ga0316202_100987484	F058952	GGAG	MTNDTKPSAEQVKFWEGVKQIILDRADVIAELDGDERDALNELRCASMSISEDVNYLMDFCYIDVIEFCRAADFLCEEYSWNTSENEDKRDIGKKSLALAEALRGDAGDGPRLSYGQAKDFGSIYPLINGLLHTKPNKFQMERLAEHGITWEGEVDEH