NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10052539

Scaffold Ga0316202_10052539


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10052539 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1910
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097264Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0316202_100525391F097264N/AAVDRQDEEGQMYDRGEINPLQYGLRTAGNAVDATLGNVVGTAADYLIPDGVEKLVGEAIMNSPPGVFQDHLQLGNKLAAQYPEQARDASAIASVAEAVPFVRGITTAAKAGRRVDELTGEDSGKGMLLGSANNVIPGYYSPQQTASVAAWLPSQITGTVRDMASPASRAKYREQGITTSSQQIMKRAREGSKSKLETFIYNLPPFKSLKGSKNIEKGVPRAIAQGQYLGRIHAQSGRVGGSDLIDEIMRRSDVAETVDYYFGAYADSVRNNRLKPYPKDSAGKPKKMPIQMSNEDLDFIEDHFSRVWTEPSQRLGGGPEVSFRDAETPILAIKNPGDGRSYTGRHHMDVLHKAPFVTKVKQIFKNRDNVSADELFSLLNAEAAVSQGLKEAKFRYSVAGQAADGGVWITGSRPGSAITEGGINYLVKVTRDGKLIGVMSDEHNLFEGIAGKIQEKTRGTVPTLNAMKHLIPNRLIAVTPPMIRDLKGRSDYQHPTGKSDGRPYGEVVDEIIDFKPSDAVLKAEQQRQRGMLTTAASAAVMGQTQGE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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