Scaffold Ga0316202_10040119

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10040119
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2217
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F007947	Metagenome / Metatranscriptome	342	Y
F075986	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_100401191	F007947	N/A	NTILCLQNQMPDVGMDDLLVIGYLVVGLAIIIYLVMDALKEN
Ga0316202_1004011910	F003073	AGGAG	MGKKLENMTQDERIAYWSAQREKERIQRRNRIAKLSLDQRVAVIKVYQLVDEILDTAMYPDLGGIKAVTAYDLQELAAAKDRLRHEFNFDVREHG
Ga0316202_100401192	F075986	AGGAG	MSYDDDTIANACMKCVDDWDMDTLLQFAYDEMFHHYTEVASPESLKSFMKEMEH