Scaffold Ga0316202_10035823

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10035823
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2364
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F039704	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_100358231	F039704	N/A	TDQFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMKRASTTLISNK
Ga0316202_100358232	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDSVGSPTADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG
Ga0316202_100358234	F003678	N/A	MDQFMLYAPLIIASIALILCLYACVRVGQFINASQGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGTIKNVGG