NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10017963

Scaffold Ga0316202_10017963


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10017963 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3495
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016900Metagenome244Y
F018642Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0316202_100179631F018642GGAMASLKEIQDQINNNTFDPSKLNSRQKRAVDEAIKRGLITGPSMNELQTERAGAAKDVATMDEAVKNPIGVRLQQTGSSLDGRSEAVLAGDLIGSITPYVAMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFSDKLTARLPGRFKLLGGLTKLLAKVADPTVGRVLASPLGRAEVYSVLGGTAGAGAGSVTYDMLNETVGVAAMDAIASDMENMSPKEVNTDMMANAADSMFTALAWNAGAAALTPVITKGLGKVGRLMIGAKSKDAKELVNIARDKGLPLPMVMTAQEGTGLLGGFAAKYFKVLGIMPFINGIGKEALQGAEQAAGRNYLNNDVLKYGPLVKTGMLSATVWKQAEQAFIENSNLINASYKAFDTLADTIGNPKVIPTGHVKFMAKNYVDELSMKYPGIRGYAEDTVGNIDMKAIEKLTGTGDPLALFFRYMNKIDDFVTPKQYKGMMETLNRAIGETTYDNIRPTLWSIREALENDLNSFGGNITKETFLKDDTVKAAYETLKKTNAAAAEADMALKIKASEGLRDKLYGANDTFSTLMNFYQRANATKVFKEYSATAFTNKALAGIGSMEKKKAQRFFNDLANDVFTRGDSTAIKQFRQLLGADKITSKKTGQAIGVTKGGGEALYNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNDSTVRAGINGTVDVMESMVQKGDVVDFSIDKVKGGTNIFDATKIRFSPKDTSSFNINKFMRELGIGDATDDVAKEKMISILGGRAQSKEFEKFLTYMKAISDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPIAMRAFN
Ga0316202_100179632F016900N/AVAESPDRTGGIIQIRGADGRLRNYKGYTLKDGTKQIAAGIGPNGREQFVPVSQGGPIADSDGQIIGQYENFLEQNSVDKRLFDIQDVLGNRYNALSVTRDVLKTLNQIDQDGNKVKAGAGLQIDQFTRRLSGVAKEVFGFEISGMSLDALEQKVSELQADEYAAIDRDPDLSDEGKEAAKKNLDSKNLIKQAKARLKNRGMLSGLSREEQEKLAVQEVTLTYALANTFKDQDRLTQRDVNAAKEIVNIFSLGRSSKDVRASIEAIGRQLESDIRRQESLYTVAGGLENTLKDLRRLKNFEVFEGEGGVASQLSQDLSLEEIENIIEGIN

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