Scaffold Ga0316202_10004310

Overview

Basic Information

• Taxon OID: 3300032277
• Scaffold ID: Ga0316202_10004310
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8262
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016900	Metagenome	244	Y
F018642	Metagenome	234	Y
F029773	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316202_100043101	F029773	N/A	MDILDNTLEEFVELFQGSATYFGASKPLGQTRSRDGKQEFKHWVEPRPMTREDWLEHLKGEKYYGSVP
Ga0316202_100043107	F018642	GGA	MASLKEIQDQINNNTFDPNKLNARQKKAVDEAIKRGLITGPSMSELQSQRAGAAKDVATIDAAVKNPIGVRLQQEGSSLDGRSEAVLAGDLIGSITPYVAMRKKIFSAAKSKVPGDKSTGLFARTKMFSNFADKLTTRLPGRFKLLGGLTKLLAKVADPTVGRVLASPLGRAEVYSVLGGTAGAGAGSVTYDMLNETVGVAAMDAIASDMENMSPKEVNTDMMANAADSMFTALAWNAGAAALTPVITKGLGKVGRLMIGAKSKDAKQLVNIARDKGLPLPMVMTAQEGTGLLGGFAAKYFKVLGIMPFINGIGKEALQGAEQAAGKEYLNNSVLNYGPLIKTGMLSATIWKQADEAFKQNSNLINASYKAFDTLADTIGNPKVIPTGHVKKMAGDYVDELAMQFPGLRGYAQDKLGDVPLKDLQKLQGTGDPLALFFRYMNAVDDFVTPKEYKGMITTLNRAIQTTGYENIRPTLWSIREALENDLNSFGANITKETFLKDDTVKAAYETLKKTNPAAAEADMALKIKSSEGLRDKLYGANDTFSTLMNFYQRANATKVFRDYNATTFTNKALAGIGGMEKKKSQRFFNDLANDVFTRGDPTAIKQFRQLLGADKIVSKKTGKAIGVTKGGGEGLFNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNESTVRAGINGTVDVMESMVQKGDVVDFSLDKVKTGNNIFDATKIRFSPKDTSGFNINKFMRELGIADPTDDVAKEKMISILGGRGQAKEFEKFLTYMKAVSDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPIAMRAFNDALNPDEQIRLLMGKKVGDGVPGVLGIGRRYFKGRDIQTAANILKSPGVVGRLGLTQKREAFARLVNYLNESDADVPRVDPKTVTPEEITERMGQLEAKVPAPNYNEDTIPKNNFETMFAQDYSGSSGNLQTDTNAVTMLSTATQNEAMVDAEEAPVEAEEKTMVMADLQLEDPVAQAPTAPVPPATGQVNPQQFQALFPNDPTGAAIAQRGVRRG
Ga0316202_100043108	F016900	N/A	EGSQAKLVFLANLASGLLTGTTRNSGIGGALEVFGQALGPAVNNYATIKLKEGELRARNREASLNAAVDHMKFVNENTVEESPDRTGGIIQIRGADGRLRNYKGYTLKDGTKQIAAGIGPDGREMFVPVSQGAPIADSNGQLIGQYENFLEQNSVDKRLFDIQDVLGNRYNALSVTRDVLRTLNQMDESGEQVKAGAALSIDQFTRRLSGVAKEVLGFEVSGLSLDALEQKVAELQADEYAAIDRDPDLSEEGKEAAKKNLDSKNLIKQAKARLNKRGMLSGLSREEQEKLAVQEVTLTYALANTFKDQDRLTQRDVNAAKEIVNIFSLGRSSKDVKASIQAIGRQLESDIRRQESLYTVAGGLETTLKDLRRLKNFEVFEGEGGVASQLAEDLSIEEIENIIEGIN