NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315270_10313147

Scaffold Ga0315270_10313147


Overview

Basic Information
Taxon OID3300032275 Open in IMG/M
Scaffold IDGa0315270_10313147 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)987
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074558Metagenome / Metatranscriptome119Y
F090056Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0315270_103131471F090056AGGMAEALELSSANRIRQLAGMPVEPEPLPKPENPPAWSEIKESEDYKTLTYPEQVDLARQWGAETKQYASTLKDYTPEQDAEIDDFV
Ga0315270_103131472F074558N/AMRNKIAMDSEKQSLELQRLQLDLAEKRKEQEMSSPSRRATQAADIAAFLEQEKQKESGIPIGEQMASKMVAQGGPGILEATKMQGELDVEARVKQARRDAMMNFAAGEKSLLPTASVDLGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVASTYEAEGYDRDSAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYNNEQAERMWRDPKTPKGIKVQLNNFFGESEEPTASSYIKSRLGR
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