Scaffold Ga0316203_1014885

Overview

Basic Information

• Taxon OID: 3300032274
• Scaffold ID: Ga0316203_1014885
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2332
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F049291	Metagenome / Metatranscriptome	147	Y
F060432	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316203_10148854	F049291	GAGG	MRTSIKKMRIKKVSKKAPKWKQQRLKDQSLRVTIMNRSFDLSETEDEAVAIHQGRRYP
Ga0316203_10148857	F060432	AGGAG	MTYEITHEQRLALLEAHNNLRTALQTVGECQDLWLSDIRNLEKLEYDLHNIFKFVPKQDAQGRSMYYSDWILDEEDTDNDDA
Ga0316203_10148858	F002430	GAGG	MMTLKLPKKQVNAILVALDAEIEMQLGGGTNWESFPEVAALLMAYYTTRCKFEEDDDD