Scaffold Ga0316203_1010153

Overview

Basic Information

• Taxon OID: 3300032274
• Scaffold ID: Ga0316203_1010153
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2931
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F103381	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316203_10101531	F103381	GGA	MIEHFEKFNDYGKGLLPLSFSHLNEFAFYRERWALRRIFGYQFPTSAPAIRGQVVESGINMFLNGIPIEEASEKMIAEYDANCLEINDPKIDDERA
Ga0316203_10101534	F005751	GAG	MSDIYLLDFEPNKLSYQQEELGITFADLDTAVELMKKEEKMIVAELTVYYSRKGGYKNMTELNGLIYSDTKFKDYFDRYEITLKKRNQSKIRFESFKAFRDDLRTKVVNEREMAKRNL