Scaffold Ga0316203_1006097

Overview

Basic Information

• Taxon OID: 3300032274
• Scaffold ID: Ga0316203_1006097
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4148
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F031530	Metagenome	182	Y
F033836	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316203_10060972	F033836	N/A	MGKLMTISEYEFFGVVYNENAKDTRNTVGEGVPAVREQEEGTSTKEERFIDMVNETEVKSAAFCALALLAGLCCALLLGCKTSAKVEGGAEIIELKPLKMQELTYPMYDYDKIC
Ga0316203_10060973	F031530	GGGGG	MIMDFVIYKSESDNHGRLVELVHNKHCEVYEVVVDGIPVFNSNDYQTAEHEYNMECV
Ga0316203_10060974	F007343	AGGA	MRVSDLQPAAYPQSPSVEKPNSDAHALFTNDFNKSSFIEANGDVEIVWNNQYRYWEVPAFAESRAAYGIAKQRACDTWGSE