NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316195_10356205

Scaffold Ga0316195_10356205


Overview

Basic Information
Taxon OID3300032263 Open in IMG/M
Scaffold IDGa0316195_10356205 Open in IMG/M
Source Dataset NameCoastal sediment microbial communities from Maine, United States - Phippsburg sediment 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8293Long. (o)-69.8133Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020338Metagenome / Metatranscriptome224N
F055661Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0316195_103562051F020338N/ALADRCNNEEDKPVTVMAKMRHINATSVNDYLIPPCPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFYQWF
Ga0316195_103562052F055661GGTGGMVLNLNIDFALADATPQKLELLQAVFDAHDMAARNNQNSSSGAAVNAFFGSGQLTNGIASAILTLGDAHGPIGPARFVYERFDERALKSAIEAGMKIPGFGNSFFKDQIDPAWSRVSELIKFSFPNANARIEQLHGWMKEAGKNIHPNAALYTAVVCSEL
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Institute for Fundamental Biomedical Research
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