Scaffold Ga0306920_100428162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0306920_100428162

Scaffold Ga0306920_100428162

Overview

Basic Information
Taxon OID	3300032261 Open in IMG/M
Scaffold ID	Ga0306920_100428162 Open in IMG/M
Source Dataset Name	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1967
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001327	Metagenome / Metatranscriptome	721	Y
F104208	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0306920_1004281621	F001327	N/A	MVRANWSRIASRKHMRRQGLEDIDGKVPLFAQPPKKPRRSKAELREQAEAAFRNWPARQTSKDN
Ga0306920_1004281624	F104208	N/A	KTRQTPQIVRVQWRAMTFGMKPFFICPRCNARRVYLYHDSLTCYCRTCADLWYLCQRKRRRTRLLSRSHKLRVSLGDETGKPGSPYPARPYLQTRQRYNRTIAKLRHIEQAYLHIVTHDGRYIGRERDELGRFMPSETYTDDDVTDDLGR

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