NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10874407

Scaffold Ga0315271_10874407


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10874407 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045092Metagenome153N
F060904Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0315271_108744071F060904GGAVKLPRFTSGSIGRLDYKALNEAFTAIEKMDGKAQDGGSYEGAHRESFIATITGLMTDSVQGAYQTTGQGTLFKTYVYNWNEVDISYGLEGAGSGVGVSDLQGARGIDYADGVTITAPASYYPAIDFAPYRR
Ga0315271_108744072F045092N/ANISLNVDVISGNYRASFRPGTIQPDMATIIGSDIAQNITTTIMNLDSGAVGTNAGGYYWFRNLSTSTSTTFDPSIKISSCAATAAGTSFPFLNLRPGEYALGRCVTTSFSAISSTATANLQFGIMSL

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