Scaffold Ga0315271_10210674

Overview

Basic Information

• Taxon OID: 3300032256
• Scaffold ID: Ga0315271_10210674
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1561
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025459	Metagenome	201	N
F041023	Metagenome	160	N
F080052	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315271_102106742	F025459	N/A	MKLILEFDDSERYEHEVACKSLDVLILLDALDSELRSALKHQCGEFANLDVETMESVRAWLWAERNSRNIPELK
Ga0315271_102106744	F080052	N/A	MEPLTFLALFATCTTCAFIAGYLIGNMKATCQAEQTRRWWMNRQIRRERGEK
Ga0315271_102106745	F041023	GGAG	MMTAEERHDAECQFTRNLLCGMIKQAVEDMRSEKVFVSKQMNAHQEIDRDTALHFIRSKAFQGICDVLALPADKIKTQALKYEYRD