NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10014484

Scaffold Ga0315271_10014484


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10014484 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5284
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005024Metagenome / Metatranscriptome414Y
F005633Metagenome / Metatranscriptome394Y
F009398Metagenome / Metatranscriptome318N

Sequences

Protein IDFamilyRBSSequence
Ga0315271_100144841F005024GGAGMTVDSGKFDLAMKQYLLTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGTSRILKRVHLITQARAAKNPTVNLNGGHGLYGKTMKKAASSFMRKAIGSVGYLRSAVVKSIRIYNRGFSQYSAPKWVPLVKPPGYRAKKKPNAALVAMANQYGLQEENVAIHKGTVAHGFQAVPGFNPTAFVSMRTGVA
Ga0315271_100144842F009398N/AMTTIGSSLQQGMTVLQQMLGAPMFIWEGTSIRCIPAAVTDANTPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLLKEDGQFILQENSDRIALTFCKPRPVVGRTLVYQGRTLRILSCRVDASGAYYHLELGAKTK
Ga0315271_100144849F005633AGGMRIATTISVDRNDKAKIVAGPEVDASLQRTNFNTATIPEGGKLILWIQGSVAPKIRKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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