NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10002027

Scaffold Ga0315271_10002027


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10002027 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12566
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045503Metagenome / Metatranscriptome152N
F098523Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315271_1000202720F098523AGGGGGVDLDKLKDALQKARIAFSERLVPHANPATTCLVVQRVGYALSVTPTLYYHGPVVEIRPSGGPRISFISNKDPAELVAVMDTFVQVRKWAARLQPKWATRQLALITGSNPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKIGASPKLIATDLIQLHQENTPKRSWESFVEDWNCQYSASFGHKLALSASYIYAWNGMRFLMDGDELSMDVWGPVFSAAFPEAIRLLESIQAVLGKTVKGRGNEGGPPGGGSTRLNEPATISDSLLGLSQENPTKRKNHEP
Ga0315271_1000202721F045503N/AMKVKLPSPAPGNQRVREIQQWLGAYGGSVANAYVVNAGALRELGAERGILEKILWRVPREKPEMPLTGEAMMELLAPKRLMREVRKQLKLDTQEHHAHTKAFEQSRQQLIASKIPADAQNREAVIREVESWFKIVLPEMRNTKAILRATELRLEARRDIHPVLPPLRATTELVEQLNKREPGRVYIDKDGGELLLLKPGEQAVLNEKGLRIENG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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