Scaffold Ga0316209_1019330

Overview

Basic Information

• Taxon OID: 3300032255
• Scaffold ID: Ga0316209_1019330
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month chalcopyrite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2722
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F078756	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316209_10193301	F003423	N/A	FDAPENGVKQLREALDRKDEQNKKLEAELASYKEKEIDSVFGQIGLSTDKGFGKALKQVYDGPVNTESITQFAKDEYGFEPTGQVQDVTQPEPEPVVQDDARARVAALDANSTSVMPQGLDEQLANVMKNGTVKDQLRAKLNIMDQQK
Ga0316209_10193303	F003196	AGG	MQISKEVLIDVSDDASNSSGVQTDGLLLSGIVFPAAMTGANVTFDFSYDGINWKDVVETDNTEVTYVVSAGNVVRVDPSGWAFATAGFLRITSDGTEAADRQINLIFKSS
Ga0316209_10193304	F078756	AGGAG	VSSTIGDLVDRVFREYLEPPESVESYSYLTGGISSTTQDTFNYEENLFSTEEEDALGAGAILEIGQELMFSKSLNVVTNEVTVQRGARGTTPALHSAGDIIKITPAFPRKNVYDAVCDQIENLYPTLFAVETKTLTSGTGYRIIGDYGTDVDNNNYLVAPVKAISQFTDFSAGTDETGLKFIGVAVEMVDLPNGFTWTDEDGTERTKTYTTGPQVVHALQFQGVSSGYECFVTFKKK