Scaffold Ga0316208_1067409

Overview

Basic Information

• Taxon OID: 3300032254
• Scaffold ID: Ga0316208_1067409
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 991
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F035770	Metagenome	171	Y
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316208_10674091	F087206	AGGA	MSNQYNEQELENIQSYVLEQDRKGLLEKQITDMVITYGLHPDDDRDAILEYIAESIFY
Ga0316208_10674092	F035770	GAG	MKKYKPITYAMAEYAYASHLRDNGHTGEIIYPNKDTSKQHTDGTWLLITITGERLGTVSPSGTVRLT
Ga0316208_10674094	F002399	GGAG	MTIKTKSHKSIIGQLRKKYGLKDNTPIHKVEQIMTLEDWQAFSMALTFPNGKPTQRGK