Scaffold Ga0316198_10012523

Overview

Basic Information

• Taxon OID: 3300032251
• Scaffold ID: Ga0316198_10012523
• Source Dataset Name: Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5261
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Netherlands
• Coordinates
  • Lat. (^o): 51.4666
  • Long. (^o): 4.071
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048278	Metagenome	148	Y
F091879	Metagenome	107	Y
F106092	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316198_100125231	F048278	GAG	MDNIIEVIVKLSRMQGQAIDRAQAEAINTAVEKAHDKWQNESKDLVD
Ga0316198_100125232	F106092	N/A	MKDYDKCHKCGGQGVYLGSQEVGYTYNGYVQIEHDYECEDCQATWDVNFELTPKERDNHG
Ga0316198_100125238	F091879	N/A	MLLRYMNVQSGNGFSVDKDLNGYNPLVEAYAVGGATDSVEMIDNKLLSYNTFREIMELNIEFMKRTEFSDDFLNVKVIGAWVNDDDYAYIEVSNVLFDRDSAIALGKKRGEEAIWDFKNNCEIKLT