Basic Information | |
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Taxon OID | 3300032231 Open in IMG/M |
Scaffold ID | Ga0316187_10000447 Open in IMG/M |
Source Dataset Name | Coastal sediment microbial communities from Maine, United States - Cross River worm burrow 1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31950 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (44.12%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow → Sediment Chemolithoautotrophic Microbial Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Maine | |||||||
Coordinates | Lat. (o) | 43.917 | Long. (o) | -69.6219 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F070130 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316187_1000044715 | F070130 | AGG | MTKVREIPDTPARQPDFFVGWWEIVFHIRDGEQTDVTGIIEHVDAAGRFTVFRDGERIGAGHHVEFTVDPDAFTNVQEVAGAHKQIGRELAVYRFSGDVLEVCKASEHTGRPTSFASPRGSGWTHVAIRRISDDDPRIRAQR |
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