NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307472_100459953

Scaffold Ga0307472_100459953


Overview

Basic Information
Taxon OID3300032205 Open in IMG/M
Scaffold IDGa0307472_100459953 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004042Metagenome / Metatranscriptome456Y
F010654Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0307472_1004599531F010654GAGVKQHLGRQSGVQNVDVSLLDGKVDVTPKEDGQIDPAQLLKATYDSGVSVAEMDMTARGKVVKDASGSLALRVTPNQTFALTANDLSKGLESLVDSP
Ga0307472_1004599532F004042AGGAGGMKGKHLTLLLLLGSVFVPPLTAQIKHIEMRVEGMT

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