Scaffold Ga0307472

Basic Information
Taxon OID	3300032205 Open in IMG/M
Scaffold ID	Ga0307472_100002968 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032205 Open in IMG/M

Scaffold ID

Ga0307472_100002968 Open in IMG/M

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7272
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (70.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7272

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (70.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004426	Metagenome	438	N
F014601	Metagenome / Metatranscriptome	261	Y
F025249	Metagenome	202	Y
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307472_1000029683	F004426	N/A	MPALAQRRHSHPTRTVHSVVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPETGSTIDYEEWGSGMDLAGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTIILTENLIDKHWDAIDQSTWRPMRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVFVNGEPVKPEEMRGSTLLPVNIPTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSAQWRVFEKTMRSFVKTKVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKTIVNLRATPKVNPIPGKTRKEIVLGVRKRRKGTKHNREATRSVIHLKDQILAFDVSHGGDRGQAYVETDKSGVRTVYVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA
Ga0307472_1000029687	F025249	GGAG	MKSLGSRFNNLSAEVSEPSTGSNPRTPPPSVFGIIVVGLLAGLVTGLLAGPNFTLQGFFLGFAGGALLTAGLYFYSAERSRPAK
Ga0307472_1000029688	F028763	AGGAG	MSEPTRSKRRIVLGIFAIIMGCISLVGLSSTSYYFGLGIFGGAYGAVMIALGVALITKKEGVV
Ga0307472_1000029689	F014601	GAGG	MNSSKSESQRPSPIPRAVLAGLIAGIAAGLISYIAINSIIGLIIGFIAGAIVGSRTVLMMARAREQDQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307472_100002968

Overview

Ecosystem & Geography

Associated Families

Sequences