Scaffold Ga0307472_100000214

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307472_100000214

Scaffold Ga0307472_100000214

Overview

Basic Information
Taxon OID	3300032205 Open in IMG/M
Scaffold ID	Ga0307472_100000214 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18508
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004587	Metagenome / Metatranscriptome	432	Y
F030173	Metagenome / Metatranscriptome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307472_10000021411	F004587	GGAG	MKSHATFRRHPLGEVVAHTSEDRHPLQVVPFGRFGAGVWTGHPIGFFIVAGFMLIGLIGIPEWRWFFGATVLMGSVVGYLLWRRHQ
Ga0307472_10000021421	F030173	GAGG	MTARANTSSGPKADLEPTGSHDGSHPVAYAIVSGIAICLLLMLIGFLSDTHDTYFGAIVPASLAGGAIVAFFVWRRERQTSFVRPHGPRVHSFESSYGHVDASNLRPKHVWTPEPKHLVPFGPYGAGQWTAHPIGLFIVIGLVFMGLVSRTPVSDLMFLSLLGGAVVGMFLWLYHR

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