NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_102117968

Scaffold Ga0307471_102117968


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_102117968 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)707
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036648Metagenome169N
F063126Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1021179681F063126N/APALGAAGWMVLVCVDRKRLRPEPLPAGLVQALAPHTLTTTAARALLGVPSPPDKGAPA
Ga0307471_1021179682F036648N/AMTRQGKDTLRIDASARAVRCTGPRAQVGGGLLLQGVNGGAGVVVWLRSQDPITVGAWPVLQRGDTLTPRGATVGVRFMMGDIAHGAPLDSGTVWVTRADSAVALVARGTATETLSATRMAVEATFDAVPVGADTASCRHQL
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Institute for Fundamental Biomedical Research
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