NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100166550

Scaffold Ga0307471_100166550


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100166550 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2149
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F001367Metagenome / Metatranscriptome713Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1001665501F001367GAGGMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVPAVTQPDTSLQVSITDASAPPNQLPTDLLVPLKLWERPDGSTQDFAEMVDLTRHGGLPSRAQDATLSVWEWRADGLYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNAQEAIAY
Ga0307471_1001665502F000739GAGMTLARIELWFKGLLAAAISGAAGGILTGFAAVGIDPQHFNLQAGMGATFRIGVAAAVINAVIGVAAYLQKSPLPAE
Ga0307471_1001665503F000512AGGMIRVLREAHDTPEAVARRLRSAGGINRFGEANYRAVWGWNRLAWIGGKFEERDPSTGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRAWYAQTIEREKGISVPALGPYPSRGEYEHCFALEGPSGEFLQLTPTIAEHVARAIEWSRKYPRAKNRNRLYEREQRADRSYERWAYDVLDDSVPAFHKQPFATMA
Ga0307471_1001665504F006480N/ALQMRRVFIGGIALLFCGVIAARSKTEPLIFVFLRVEHEQDLAILRPMIAPDIGVQLDSGPSALERGAVLRCTSSQRDHDAIVEGHIAKVSDLLLDCGDQKFVVKTLDFRPQR
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Institute for Fundamental Biomedical Research
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