NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307471_100121037

Scaffold Ga0307471_100121037


Overview

Basic Information
Taxon OID3300032180 Open in IMG/M
Scaffold IDGa0307471_100121037 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2438
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y
F004349Metagenome / Metatranscriptome442Y

Sequences

Protein IDFamilyRBSSequence
Ga0307471_1001210372F004349AGGAVKKRNWLALPIAALVVAGCGNTPGGPAKPPTAQQILAKPDAANVKDGHFTLVAHIVSGSVTFDATGDGIIVVKPQQASRFTMQTSIAGQSLKFEEIIIGGKEYDLSPDNPRWTVKPSTNSSNPSSFKGTDAVYVGEETLPQGKAWHVKAKDDSGNPFEAWVRESDGYPLKYASTMQGSTFTATFDRFNTGQTVSAPPASDIQQ
Ga0307471_1001210373F004003GGAVIAKLIRIAVALAAVGLLGACGGPGTPLGPPSAKDILAKPLHSNLNDAHFLVSGKFVSPSPGVSVDVHGDGAVVYKNPGAGRFKFETTVAGQKVSYQDISVNGVDYTFVVPGNGKWTAKTTSSGLGRDSFTGASDFAYVGEENLQSGKCWHAKAKDKDGNQFDGWIRESDGYPVKYEVTQQGNALTLSFDKYNTGESITAPPASQVVQG
Ga0307471_1001210374F004186AGGVPLRRLLLAVGAAVLAAGCGVPTPAAPPSASEVLAKPQQSDLKDAHFNVTGKITDNGTTVELSGDGALTYKPKLAGRFQFTTNVGGQSVTIKEISLDGTNYGMTPASPKWVATKSTTGIDPSAFAGASDQKYVGEENLPQGKAWHATAKDKDGNAFDAYIREKDGYPIKYVETQSGGQNITLTFDSYNTGEAITAPPADQIQQG
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