Scaffold Ga0307471_100092517

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100092517
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2710
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006299	Metagenome / Metatranscriptome	376	Y
F010312	Metagenome	305	N
F014110	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_1000925171	F006299	N/A	MTVPAEVVLIEVPEIVEFNQLKGRTATEALTELVEEFGVVYVTAMTRQGCSGCETQKPLFKTLAEKLTGENTGRVRFRSLHVNYQGGDRRESWSSKGVFGHAAYPTYMIHVKSHVGPLEIYRSVYPPMEELEKQIKESFELADFYKTEAENASRLISERP
Ga0307471_1000925172	F014110	AGG	LKPKTGSKSVGKTKKEQQIVDLGKLPDKVGVAVDFLREHVKSAKGRVSTKGNQIQVEGLKHKEVKLLLHKFLRHNGLDDHRVLSQSGTLEIVPQHLVVHSRPQEGTPPPASATMPYLFPGASAPVPTSKKNKKS
Ga0307471_1000925174	F010312	N/A	MKCLPLYGLFRLEMASPKKELMMLRVFRLTLPAALLVSLTWMTLFTDAARQAVINSLGANANIIIFILGLFLVVGLYWVMGVYERKILYENHRSRPAF