Scaffold Ga0307471_100083418

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100083418
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2824
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_1000834181	F004003	GGA	MTKVLRFAATVVAACLLAACGGPGTPSGPPSAQDVLSKPIHAGNLKDAHFLVTGKFATSGATVDVTGDGALLYKSPTAGRFKFQTTVAGQQVSFEDISINGTDYTLTIPGNGKWVAKASTSGLGPSSFTGTSGFTYVGEESLAGGKAWHASANDKDGNPFDAWIRESDGYPLKYVITQQGNSLTLTFDK
Ga0307471_1000834182	F004349	AGGA	VKAKPRATLGIAVLMLTGCTATTNQAAKTPTASEILNKPDQANVKDAHVTLVAHIVSAGVAFDATGDGAIVVKPAQASKFTMTTTIAGQSLKFEEIIIGGQEYDLAPDNPRWTVKASTSANPSSFKGTDAVYLGEDTLKQGKAWHVRAKDPNGSPFEAWVRESDGYPLKYESTTQGSTFTATFDLFNTGQTISAPPASDVQSQ
Ga0307471_1000834183	F006952	AGGAG	VIGPLGTANHEIREAERIDQERRRAMLVEPRRLTDQLLGQLEELNLDGVRIVPCSYDPGLEEIRSHLVGWPGIGARLLQRLQSGTRTAELIETVFTIQEVISPPALPAGTVIFEEPDLV