Scaffold Ga0307471_100081561

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100081561
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2848
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F046497	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_1000815613	F000092	GAG	VKQHLGRQSGVQKVDVSLIDGKVDVTPKEDGQIDPAQLLKAVYDSGVTVAEMEVTVRGKIVKDAAGNLSLQVSPNQSFSIAPNDLLKMVESFAGSSAAVTIRGELYRKPAGKKKAVASAPLKLLILEVQKKE
Ga0307471_1000815614	F004042	AGGAGG	MNTRKLALLFLLGSAFVPVSHAQIKHIEMRVEGMT
Ga0307471_1000815615	F046497	AGGA	MGLRNSRGRGRSLVLGLVVWSLFASAASAQGPAPETAPPLFPGGALISYNSIFTTRGLISNLAGNIPLTARPTFSHEGYFNFTWGFHRDFDLTVLVPVMTNHFEMPKPIGIPMSGGTGLGDAMVLVKYRFYRRDSKRGTTQASVTLGPKLPTGRTDLADRNGERLPASLQPGSGSTDFFVAANWTYTGLFHVRRLVVDEEFHSLLRSQGTQETRLGSDLESRFWLSYRPYESKNGAREWFIGPVVTWLRSQDDRIAAINQSGSGGDVLLAGVTTYVGVLPGVHLWLGMDWDVAHSAGAMFMPVRRHISFGVTRQFRLHFQ