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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032180 Open in IMG/M |
| Scaffold ID | Ga0307471_100043935 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3614 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002781 | Metagenome / Metatranscriptome | 530 | Y |
| F005157 | Metagenome / Metatranscriptome | 410 | Y |
| F032071 | Metagenome / Metatranscriptome | 181 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307471_1000439351 | F032071 | AGGAGG | MPETTIGLEGDASPEGSRYRLLLEVTDRVARTQSLPEALKELASPVLALTGGELLNLSLYNASRDGM |
| Ga0307471_1000439354 | F005157 | GGA | MRLKSALEDFEANTLGAVLGLLGRLSYVGRLHDGNGTYDHWGLARVYGDDAAQNAMRASHRALLSEVLKKPLAVLLKDVPASCANEHLTESEFLAALAQSSPKPLSPAARAHLGSVLSALSALVESRESANPRGASQPR |
| Ga0307471_1000439356 | F002781 | GGA | MNWHKAVSLFLWVTPHVLLGVLVVILYMRRLYREFPVFFAYVLYEIAEFILLFALYSIPRAGKQYAYAYCATLLLSIALRFGVIDEISKDLFRESQFLKVAARRSLQCVTGLLLVLGVLLGIYAPGDNSARWYAGVFVVNRGAAMTQCGLLLSLLLFSGFLGLSWRRSAFGIALGLGVLTSVDLAMFALRAEFSSEGGAEFLDLLITGIYLVCVLIWIGYLLAPERSPASLTVLPNGNDEVETWNRELQQLLKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |