Scaffold Ga0307471_100012447

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100012447
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5810
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y
F069900	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_1000124474	F069900	N/A	MTSLTGVFLLLFSVLVVVLDAANFFAIGISFFIMLIGIMLVMVGAMGGFQKKPDATPTHTQVVTEIVKVRCKYCGALNLETSQDCSNCGAHL
Ga0307471_1000124475	F020766	N/A	VVDLLTGGIVLFAIMAGAGIVPLIMAFRVKVRSLRILSLLLGLFAVVHGFYHLASGFQQEFLAEAVFEPISLVLLVGLGAYYSKVGIR
Ga0307471_1000124476	F017116	AGGTGG	MVLDDITSVFEMISLVLILVAFAIFARLAIKGKSLGSFRFQLSIFLLIWVLSEIPHIAGTLGLISTAAYSDIGLYLHATSMAVFALFVGWRSIKFATLPIPPTGSTSVATEPPKRIKG
Ga0307471_1000124477	F011479	GAG	MSFDELVSESVTETMSKILGGDTWKAINFFFDMKTIAREPEDFAALLAKVFGATSNVLQKKIGETILGKVGAVQQTSSSLDFRQILRLAKAKFPRQPLPDQLGL