Scaffold Ga0307471_100006035

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100006035
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7652
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006466	Metagenome	372	Y
F013280	Metagenome / Metatranscriptome	272	Y
F075877	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_10000603510	F075877	GAG	LKGQLVFRLGIGNGDGFDVLDSKEEERVLHRIENRGSFNTLDVAVQLHYSVNDGGRHRVHEDHYILRLVFQPGRVEVLVHHLKGVRRVEPDELIRLIVQELNVELTRDRYSQIQLEAVDI
Ga0307471_1000060354	F006466	GAG	LLLIVWGKVARDLYGLPGPDSALLLLQFMLVIFLMEASTTTLTFDHAIKQLEGKEDDLSAVARMRVTRWERLQLLNLGKLTIASFGLTLGLLILGSLISVSVNHIAFSGILVLAAFVAIFILLTYRREPEERGRPVD
Ga0307471_1000060357	F013280	N/A	LNTIKLLFWSGIAYALLLVLVRDVFPSESTPTISLTGVPLIVIVVMIARDLARKSTSPTIRRPIATTTGFRGSPLQFLSGQFRVATHASNSYFENVVRVRLRELLTAKVAVETGEENETVRRILSDPRVGPELLQDDSLYRMLYGPTPQKGPARINLINDAIDLIGAWNG