Scaffold Ga0307471_100004580

Overview

Basic Information

• Taxon OID: 3300032180
• Scaffold ID: Ga0307471_100004580
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8495
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002983	Metagenome / Metatranscriptome	515	N
F009321	Metagenome	319	Y
F024988	Metagenome / Metatranscriptome	203	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307471_10000458010	F002983	GAG	MTDPTVVIIGSFLLAFKAILIEGSEVAILSLATIKQLGRNNILFGVIAGGLGSILTFLVVWRIFLLLPAIIIDFATATVLFYFSSRFLRGFVKYAIRHKSFREKMARIEKEVIEKDLKREGAIDSTQPIRFSVPNSLPVLTITLTEGFEASLVLAAAGAFNIQWTLIGAAVSLIVLIAVSAVSYDYLMRVPRWLLDLIAGVVLLSFGLIFFASGVLSALTGSI
Ga0307471_1000045804	F009321	N/A	MCSLGQMSNPPRLEGKDRRSSTEYFKENRANYLMGEEWARERDKAVLNTVYYCEICNIIIELGDADISIHKKDLPHHKMRRVMILRCCRCGNVVTDSYAQYSPEKNQFWCKNCISEAGAEAFHSG
Ga0307471_1000045808	F024988	AGG	MNRVPWAPLNAGVFLIIFGGLILLSFFNIGVNLFTVFPLIFTVFGIWLVIEAFVFPPANAYAPPRVMVVGWGALIAGLGLLWFVGATAAELLPVALALLLVIVGIGAVGYSFMKASPKSPTTSTS