Scaffold Ga0315276_10564321

Overview

Basic Information

• Taxon OID: 3300032177
• Scaffold ID: Ga0315276_10564321
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1224
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5099
  • Long. (^o): -110.3566
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044971	Metagenome	153	Y
F074554	Metagenome	119	Y
F102805	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315276_105643211	F074554	N/A	MVKLTNSKGKLNWGLVFGGLVGTVVPVIVTAATGGIGAVTIPMWVALAGGVSALGAGNVELKTKVERALDADAAKTSVDTSGE
Ga0315276_105643212	F044971	GAG	MPTQPRPRLTPVASNPPTGSIESLAAKTVVTIPTVFSVITIIGSIASTIVLVVLGFASDLVREEWKELRAEVKEMRHRIDEMPDGATLNRLADDVQDLGRRVDRMETQLNNWDE
Ga0315276_105643213	F102805	GGA	MIEQDPTITLSEALARAAVAEAEVARLNRGIAIEIAAADRKSARKLAILRLIFLGIAALMGFLGILTLVNWYVPGSVDTDGIGSSYFQMSKDILLVMTGILGSAMANVFDAGGRSQSSAGERSATPPEQPEG