NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315276_10173366

Scaffold Ga0315276_10173366


Overview

Basic Information
Taxon OID3300032177 Open in IMG/M
Scaffold IDGa0315276_10173366 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2252
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048173Metagenome148Y
F054682Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0315276_101733661F048173N/ATVSKQKDGADSIQIGIEIVLVEIGTSDLGFEITTSLAIRHNPDIANDKPKGSKNNSGSGNNQRLEMDSLMKVIKSKGTYSEVDGTSRYGVSLDDWRAEFWSMKGCTEDDKTAFKKAWLRARERLVSVNKIVIGSNWVWLKSSLDN
Ga0315276_101733663F054682AGGAMVKSRSRNDVPKVEIKRYEPTTWDIQASAVLVELESRKEEHHQKWGCERLITLVDSEFRERFWGQMARVWDAIDHKDIERLRKAITGMVKGYDHLEKWGEDNEINPSPTNIRFVEWKTQSGQIMAVTETINDCIDLQKLRKDLTIWTLEEFEAIINEPAIQFIIKAKAFDPTAQVKRFKAGDDFGKGSGFDDMVDDLEPVYGGGDAPKMFNLPPKKK
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